IQ-TREE multicore version 1.6.12 for Linux 64-bit built Aug 15 2019
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    fermat (AVX2, FMA3, 1009 GB RAM)
Command: ../../iqtree -s Pettalidae_16S_mafft_BMGE.fasta -m TESTNEW -bb 1000 -alrt 1000
Seed:    285103 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Jun 15 23:12:50 2022
Kernel:  AVX+FMA - 1 threads (128 CPU cores detected)

HINT: Use -nt option to specify number of threads because your CPU has 128 cores!
HINT: -nt AUTO will automatically determine the best number of threads to use.

Reading alignment file Pettalidae_16S_mafft_BMGE.fasta ... Fasta format detected
Alignment most likely contains DNA/RNA sequences
Alignment has 95 sequences with 466 columns, 400 distinct patterns
327 parsimony-informative, 48 singleton sites, 91 constant sites
                                             Gap/Ambiguity  Composition  p-value
   1  Limulus_polyphemus                             7.73%    failed      0.00%
   2  Cyphophthalmus_duricorius_MCZ-135009           1.50%    passed      6.10%
   3  Paramiopsalis_ramulosus_MCZ-135006             5.58%    failed      0.65%
   4  Parasiro_coiffaiti_MCZ-132372                 12.66%    failed      0.02%
   5  Parasiro_minor_MCZ-132374                      0.43%    failed      0.00%
   6  Suzukielus_sauteri_MCZ-132256                  2.36%    passed     58.16%
   7  Metasiro_savannahensis_MCZ-134557              4.94%    failed      0.03%
   8  Aoraki_westlandica_MCZ-134653                  0.43%    passed     81.76%
   9  Aoraki_crypta_MCZ-101289                       6.65%    passed     76.68%
  10  Aoraki_denticulata_denticulata_MCZ-134642      0.64%    passed     79.64%
  11  Aoraki_denticulata_denticulata_MCZ-134647_4   16.31%    passed     71.74%
  12  Aoraki_denticulata_denticulata_MCZ-134639_1   16.31%    passed     87.84%
  13  Aoraki_denticulata_denticulata_MCZ-134646_1   16.31%    passed     72.61%
  14  Aoraki_denticulata_denticulata_MCZ-134659_1   16.31%    passed     86.03%
  15  Aoraki_denticulata_major_MCZ-134644            0.64%    passed     95.43%
  16  Aoraki_denticulata_major_MCZ-35669             0.86%    passed     95.85%
  17  Aoraki_granulosa_MCZ-134675                    3.86%    passed     96.55%
  18  Aoraki_granulosa_MCZ-134684                    0.43%    passed     87.58%
  19  Aoraki_healyi_MCZ-134638                       1.07%    passed     76.73%
  20  Aoraki_longitarsa_MCZ-35659                    0.86%    passed     96.92%
  21  Aoraki_tumidata_MCZ-133838                     1.50%    passed     73.19%
  22  Archaeopurcellia_eureka_162243                 0.86%    passed     21.47%
  23  Archaeopurcellia_eureka_162249                 0.86%    passed     21.47%
  24  Austropurcellia_acuta_MCZ-134701               1.50%    failed      0.02%
  25  Austropurcellia_arcticosa_MCZ-132325           3.22%    passed     89.20%
  26  Austropurcellia_clousei_MCZ-132339             0.64%    failed      0.34%
  27  Austropurcellia_culminis_MCZ-132322            0.43%    passed     93.18%
  28  Austropurcellia_despectata_MCZ-132324          1.93%    passed     75.99%
  29  Austropurcellia_giribeti_MCZ-132337            0.00%    passed     78.47%
  30  Austropurcellia_scoparia_MCZ-134700            0.21%    passed     20.16%
  31  Austropurcellia_sharmai_MCZ-134698             0.21%    passed     88.21%
  32  Austropurcellia_vicina_MCZ-132318              0.00%    passed     94.31%
  33  Chileogovea_jocasta_MCZ-134713                 1.72%    passed     72.50%
  34  Chileogovea_jocasta_MCZ-134714                 1.29%    passed     50.31%
  35  Chileogovea_jocasta_MCZ-134715                 1.29%    passed     45.81%
  36  Chileogovea_oedipus_MCZ-134709                 1.72%    passed     80.42%
  37  Chileogovea_oedipus_MCZ-134710                 1.72%    passed     80.42%
  38  Chileogovea_oedipus_MCZ-134711                 1.72%    passed     80.42%
  39  Chileogovea_oedipus_MCZ-134712                 1.72%    passed     80.42%
  40  Karripurcellia_harveyi_MCZ-132345              0.21%    passed     57.49%
  41  Karripurcellia_peckorum_MCZ-134719             0.21%    passed     44.09%
  42  Karripurcellia_peckorum_MCZ-134720            11.59%    passed     27.59%
  43  Karripurcellia_peckorum_MCZ-134721             6.44%    passed     40.31%
  44  Neopurcellia_salmoni_MCZ-29317                 2.58%    passed     86.47%
  45  Neopurcellia_salmoni_MCZ-134739                2.58%    passed     86.47%
  46  Neopurcellia_salmoni_MCZ-134741                2.58%    passed     86.47%
  47  Parapurcellia_amatola_MCZ-133841               1.50%    failed      4.29%
  48  Parapurcellia_convexa_MCZ-134744               1.72%    passed     62.04%
  49  Parapurcellia_convexa_MCZ-128902               1.72%    passed     71.62%
  50  Parapurcellia_fissa_MCZ-134745                 2.15%    passed     63.33%
  51  Parapurcellia_minuta_MCZ-134747                1.72%    failed      4.33%
  52  Parapurcellia_rumpiana_MCZ-134748              2.15%    passed     65.48%
  53  Parapurcellia_silvicola_MCZ-134742_1           1.72%    passed     51.47%
  54  Parapurcellia_silvicola_MCZ-134742_2           2.58%    passed     69.84%
  55  Parapurcellia_staregai_MCZ-134746              1.50%    passed     78.56%
  56  Pettalus_thwaitesi_MCZ-101223                  0.21%    passed     45.77%
  57  Pettalus_sp_MCZ-132353                         0.21%    passed     18.58%
  58  Pettalus_sp_MCZ-132354                         0.21%    passed     56.50%
  59  Pettalus_sp_MCZ-132357                         0.64%    passed     48.29%
  60  Pettalus_sp_MCZ-132359                         0.21%    passed     59.12%
  61  Pettalus_sp_MCZ-132360                         0.64%    passed     52.85%
  62  Pettalus_sp_MCZ-134967                         0.43%    passed     80.23%
  63  Purcellia_argasiformis_MCZ-134759              0.00%    passed     44.50%
  64  Purcellia_argasiformis_MCZ-134762              0.21%    passed     47.24%
  65  Purcellia_griswoldi_MCZ-134756                 0.43%    passed     43.43%
  66  Purcellia_illustrans_MCZ-60635                 0.43%    passed     50.08%
  67  Purcellia_leleupi_MCZ-129098                   0.00%    passed     72.30%
  68  Purcellia_sp_MCZ-128897                        6.01%    passed     42.86%
  69  Purcellia_sp_MCZ-129493                        0.00%    passed     63.15%
  70  Purcellia_sp_129494                            0.00%    passed     52.67%
  71  Rakaia_antipodiana_MCZ-134580                  1.72%    passed     75.86%
  72  Rakaia_australis_MCZ-134592                    1.72%    passed     61.36%
  73  Rakaia_collaris_MCZ-134574                     2.15%    passed     47.12%
  74  Rakaia_digitata_MCZ-134571                     1.93%    passed     84.61%
  75  Rakaia_dorothea_MCZ-134577                     5.58%    passed     19.64%
  76  Rakaia_florensis_MCZ-134588                    1.72%    passed     47.13%
  77  Rakaia_lindsayi_MCZ-134598                     1.50%    passed     55.00%
  78  Rakaia_macra_MCZ-134582                        2.15%    passed     80.69%
  79  Rakaia_media_MCZ-134581                        1.50%    passed     45.03%
  80  Rakaia_media_MCZ-134605                        1.50%    passed     60.90%
  81  Rakaia_minutissima_MCZ-29280                   1.72%    passed     94.61%
  82  Rakaia_minutissima_MCZ-134591                  3.22%    passed     80.64%
  83  Rakaia_pauli_MCZ-134576                        6.87%    passed     60.06%
  84  Rakaia_solitaria_MCZ-134585                    1.72%    passed     34.31%
  85  Rakaia_sorenseni_MCZ-134567                    1.72%    passed     28.79%
  86  Rakaia_stewartiensis_MCZ-134599               10.52%    passed     10.25%
  87  Rakaia_sp_MCZ-35662                            1.93%    passed     81.70%
  88  Rakaia_sp_MCZ-35668                            1.72%    passed     74.32%
  89  Rakaia_sp_MCZ-100753                           1.72%    passed     39.38%
  90  Rakaia_sp_MCZ-129612                           1.93%    passed     53.47%
  91  Rakaia_sp_MCZ-129614                           2.15%    passed     43.30%
  92  Rakaia_sp_MCZ-133847                           1.93%    passed     36.72%
  93  Rakaia_sp_MCZ-133849                           2.15%    passed     47.06%
  94  Rakaia_sp_MCZ-134575                           1.72%    passed     37.42%
  95  Rakaia_sp_MCZ-134584                           1.93%    passed     54.37%
****  TOTAL                                          2.69%  9 sequences failed composition chi2 test (p-value<5%; df=3)
NOTE: Chileogovea_oedipus_MCZ-134710 is identical to Chileogovea_oedipus_MCZ-134709 but kept for subsequent analysis
NOTE: Chileogovea_oedipus_MCZ-134712 is identical to Chileogovea_oedipus_MCZ-134711 but kept for subsequent analysis
NOTE: Neopurcellia_salmoni_MCZ-134739 is identical to Neopurcellia_salmoni_MCZ-29317 but kept for subsequent analysis
NOTE: 1 identical sequences (see below) will be ignored for subsequent analysis
NOTE: Neopurcellia_salmoni_MCZ-134741 (identical to Neopurcellia_salmoni_MCZ-29317) is ignored but added at the end

For your convenience alignment with unique sequences printed to Pettalidae_16S_mafft_BMGE.fasta.uniqueseq.phy


Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.009 seconds
NOTE: ModelFinder requires 13 MB RAM!
ModelFinder will test 286 DNA models (sample size: 466) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  JC            18230.114    185 36830.228    37076.014    37596.903
  2  JC+I          17537.124    186 35446.248    35695.581    36217.066
  3  JC+G4         16540.658    186 33453.317    33702.650    34224.135
  4  JC+I+G4       16526.764    187 33427.529    33680.449    34202.491
  5  JC+R2         16773.264    187 33920.528    34173.449    34695.491
  6  JC+R3         16559.330    189 33496.659    33756.877    34279.911
  7  JC+R4         16526.086    191 33434.172    33701.851    34225.712
  8  JC+R5         16525.054    193 33436.109    33711.417    34235.936
 14  F81+F         17574.229    188 35524.458    35781.007    36303.565
 15  F81+F+I       16758.437    189 33894.874    34155.091    34678.125
 16  F81+F+G4      15523.333    189 31424.665    31684.883    32207.916
 17  F81+F+I+G4    15502.505    190 31385.011    31648.938    32172.406
 18  F81+F+R2      15844.363    190 32068.726    32332.653    32856.121
 19  F81+F+R3      15563.110    192 31510.220    31781.693    32305.904
 20  F81+F+R4      15516.023    194 31420.046    31699.234    32224.018
 21  F81+F+R5      15513.646    196 31419.292    31706.370    32231.553
 27  K2P           18226.614    186 36825.228    37074.562    37596.047
 28  K2P+I         17533.113    187 35440.226    35693.147    36215.189
 29  K2P+G4        16537.971    187 33449.941    33702.862    34224.904
 30  K2P+I+G4      16524.156    188 33424.313    33680.861    34203.420
 31  K2P+R2        16767.756    188 33911.513    34168.062    34690.620
 32  K2P+R3        16547.945    190 33475.889    33739.816    34263.284
 33  K2P+R4        16522.439    192 33428.879    33700.351    34224.562
 34  K2P+R5        16521.155    194 33430.310    33709.498    34234.282
 40  HKY+F         17538.759    189 35455.517    35715.735    36238.768
 41  HKY+F+I       16693.129    190 33766.258    34030.185    34553.653
 42  HKY+F+G4      15376.464    190 31132.929    31396.856    31920.324
 43  HKY+F+I+G4    15353.254    191 31088.508    31356.187    31880.047
 44  HKY+F+R2      15747.765    191 31877.530    32145.208    32669.069
 45  HKY+F+R3      15425.815    193 31237.629    31512.938    32037.457
 46  HKY+F+R4      15377.357    195 31144.713    31427.824    31952.830
 47  HKY+F+R5      15370.439    197 31134.878    31425.967    31951.282
 48  HKY+F+R6      15370.315    199 31138.630    31437.878    31963.323
 53  TNe           18143.480    187 36660.960    36913.880    37435.922
 54  TNe+I         17445.481    188 35266.963    35523.512    36046.070
 55  TNe+G4        16434.768    188 33245.535    33502.084    34024.642
 56  TNe+I+G4      16424.810    189 33227.621    33487.838    34010.872
 57  TNe+R2        16693.569    189 33765.138    34025.356    34548.389
 58  TNe+R3        16444.249    191 33270.499    33538.178    34062.038
 59  TNe+R4        16425.374    193 33236.747    33512.056    34036.575
 60  TNe+R5        16421.774    195 33233.547    33516.658    34041.664
 66  TN+F          17525.154    190 35430.308    35694.236    36217.704
 67  TN+F+I        16681.238    191 33744.475    34012.154    34536.015
 68  TN+F+G4       15373.878    191 31129.755    31397.434    31921.295
 69  TN+F+I+G4     15348.172    192 31080.344    31351.817    31876.028
 70  TN+F+R2       15746.510    192 31877.021    32148.493    32672.704
 71  TN+F+R3       15414.391    194 31216.782    31495.970    32020.754
 72  TN+F+R4       15368.255    196 31128.510    31415.588    31940.770
 73  TN+F+R5       15359.971    198 31115.942    31411.088    31936.491
 74  TN+F+R6       15359.966    200 31119.931    31423.327    31948.768
 79  K3P           17643.420    187 35660.839    35913.760    36435.802
 80  K3P+I         16932.519    188 34241.039    34497.588    35020.146
 81  K3P+G4        15868.886    188 32113.772    32370.321    32892.879
 82  K3P+I+G4      15854.996    189 32087.991    32348.209    32871.242
 83  K3P+R2        16121.131    189 32620.262    32880.480    33403.513
 84  K3P+R3        15883.320    191 32148.641    32416.320    32940.180
 85  K3P+R4        15853.750    193 32093.501    32368.809    32893.328
 86  K3P+R5        15851.333    195 32092.666    32375.777    32900.782
 92  K3Pu+F        17371.572    190 35123.144    35387.071    35910.539
 93  K3Pu+F+I      16582.008    191 33546.015    33813.694    34337.554
 94  K3Pu+F+G4     15324.617    191 31031.233    31298.912    31822.773
 95  K3Pu+F+I+G4   15301.538    192 30987.075    31258.548    31782.759
 96  K3Pu+F+R2     15660.873    192 31705.746    31977.219    32501.430
 97  K3Pu+F+R3     15363.569    194 31115.138    31394.326    31919.110
 98  K3Pu+F+R4     15310.154    196 31012.307    31299.385    31824.567
 99  K3Pu+F+R5     15307.460    198 31010.919    31306.065    31831.468
105  TPM2+F        17423.538    190 35227.077    35491.004    36014.472
106  TPM2+F+I      16628.266    191 33638.532    33906.211    34430.071
107  TPM2+F+G4     15342.520    191 31067.040    31334.719    31858.579
108  TPM2+F+I+G4   15322.102    192 31028.205    31299.677    31823.888
109  TPM2+F+R2     15697.009    192 31778.018    32049.491    32573.702
110  TPM2+F+R3     15387.192    194 31162.384    31441.572    31966.356
111  TPM2+F+R4     15333.959    196 31059.918    31346.996    31872.178
112  TPM2+F+R5     15330.139    198 31056.278    31351.424    31876.827
118  TPM2u+F       17423.539    190 35227.078    35491.006    36014.474
119  TPM2u+F+I     16628.267    191 33638.534    33906.213    34430.073
120  TPM2u+F+G4    15342.521    191 31067.043    31334.722    31858.582
121  TPM2u+F+I+G4  15322.112    192 31028.224    31299.696    31823.907
122  TPM2u+F+R2    15696.992    192 31777.983    32049.456    32573.667
123  TPM2u+F+R3    15386.885    194 31161.770    31440.958    31965.742
124  TPM2u+F+R4    15333.958    196 31059.916    31346.994    31872.176
125  TPM2u+F+R5    15330.126    198 31056.251    31351.397    31876.800
131  TPM3+F        17395.123    190 35170.247    35434.174    35957.642
132  TPM3+F+I      16598.409    191 33578.817    33846.496    34370.357
133  TPM3+F+G4     15355.653    191 31093.306    31360.985    31884.846
134  TPM3+F+I+G4   15328.747    192 31041.494    31312.966    31837.177
135  TPM3+F+R2     15692.901    192 31769.803    32041.275    32565.486
136  TPM3+F+R3     15391.486    194 31170.973    31450.161    31974.945
137  TPM3+F+R4     15340.126    196 31072.253    31359.331    31884.513
138  TPM3+F+R5     15336.545    198 31069.090    31364.236    31889.639
144  TPM3u+F       17395.123    190 35170.247    35434.174    35957.642
145  TPM3u+F+I     16598.408    191 33578.817    33846.496    34370.356
146  TPM3u+F+G4    15355.652    191 31093.305    31360.984    31884.844
147  TPM3u+F+I+G4  15328.747    192 31041.494    31312.967    31837.178
148  TPM3u+F+R2    15692.883    192 31769.766    32041.239    32565.450
149  TPM3u+F+R3    15391.485    194 31170.969    31450.157    31974.941
150  TPM3u+F+R4    15340.130    196 31072.261    31359.339    31884.521
151  TPM3u+F+R5    15336.536    198 31069.072    31364.218    31889.621
157  TIMe          17555.469    188 35486.938    35743.487    36266.045
158  TIMe+I        16839.657    189 34057.313    34317.531    34840.564
159  TIMe+G4       15761.592    189 31901.183    32161.401    32684.434
160  TIMe+I+G4     15752.295    190 31884.590    32148.517    32671.985
161  TIMe+R2       16041.090    190 32462.179    32726.106    33249.574
162  TIMe+R3       15774.659    192 31933.318    32204.791    32729.002
163  TIMe+R4       15753.423    194 31894.846    32174.034    32698.818
164  TIMe+R5       15749.000    196 31890.000    32177.078    32702.260
170  TIM+F         17357.458    191 35096.916    35364.595    35888.456
171  TIM+F+I       16569.744    192 33523.489    33794.961    34319.172
172  TIM+F+G4      15321.434    192 31026.868    31298.341    31822.552
173  TIM+F+I+G4    15295.604    193 30977.207    31252.516    31777.035
174  TIM+F+R2      15658.926    193 31703.852    31979.161    32503.680
175  TIM+F+R3      15350.922    195 31091.844    31374.955    31899.960
176  TIM+F+R4      15303.660    197 31001.319    31292.409    31817.724
177  TIM+F+R5      15301.437    199 31000.875    31300.123    31825.568
183  TIM2e         17791.460    188 35958.920    36215.469    36738.027
184  TIM2e+I       17187.194    189 34752.388    35012.606    35535.639
185  TIM2e+G4      16160.229    189 32698.459    32958.676    33481.710
186  TIM2e+I+G4    16152.450    190 32684.901    32948.828    33472.296
187  TIM2e+R2      16432.430    190 33244.859    33508.786    34032.254
188  TIM2e+R3      16171.735    192 32727.471    32998.943    33523.155
189  TIM2e+R4      16149.779    194 32687.558    32966.746    33491.530
190  TIM2e+R5      16146.401    196 32684.803    32971.881    33497.063
196  TIM2+F        17406.145    191 35194.289    35461.968    35985.829
197  TIM2+F+I      16614.206    192 33612.412    33883.884    34408.095
198  TIM2+F+G4     15340.987    192 31065.974    31337.447    31861.658
199  TIM2+F+I+G4   15318.028    193 31022.057    31297.366    31821.885
200  TIM2+F+R2     15695.675    193 31777.349    32052.658    32577.177
201  TIM2+F+R3     15376.826    195 31143.653    31426.764    31951.769
202  TIM2+F+R4     15330.199    197 31054.398    31345.487    31870.802
203  TIM2+F+R5     15329.185    199 31056.370    31355.618    31881.063
209  TIM3e         17533.448    188 35442.896    35699.444    36222.002
210  TIM3e+I       16911.933    189 34201.866    34462.083    34985.117
211  TIM3e+G4      15921.743    189 32221.486    32481.704    33004.737
212  TIM3e+I+G4    15908.015    190 32196.030    32459.957    32983.425
213  TIM3e+R2      16115.811    190 32611.622    32875.549    33399.017
214  TIM3e+R3      15936.644    192 32257.289    32528.761    33052.972
215  TIM3e+R4      15905.141    194 32198.281    32477.469    33002.253
216  TIM3e+R5      15904.669    196 32201.339    32488.417    33013.599
222  TIM3+F        17385.900    191 35153.800    35421.479    35945.340
223  TIM3+F+I      16589.549    192 33563.098    33834.571    34358.782
224  TIM3+F+G4     15350.078    192 31084.156    31355.629    31879.840
225  TIM3+F+I+G4   15320.088    193 31026.175    31301.484    31826.003
226  TIM3+F+R2     15691.507    193 31769.014    32044.323    32568.842
227  TIM3+F+R3     15378.004    195 31146.008    31429.119    31954.124
228  TIM3+F+R4     15332.598    197 31059.197    31350.286    31875.601
229  TIM3+F+R5     15330.496    199 31058.991    31358.239    31883.684
235  TVMe          17180.290    189 34738.581    34998.798    35521.832
236  TVMe+I        16625.096    190 33630.191    33894.118    34417.586
237  TVMe+G4       15620.818    190 31621.635    31885.563    32409.031
238  TVMe+I+G4     15607.913    191 31597.826    31865.505    32389.366
239  TVMe+R2       15824.676    191 32031.352    32299.031    32822.891
240  TVMe+R3       15634.796    193 31655.592    31930.900    32455.419
241  TVMe+R4       15604.381    195 31598.762    31881.874    32406.879
242  TVMe+R5       15603.685    197 31601.369    31892.459    32417.774
248  TVM+F         17280.273    192 34944.547    35216.019    35740.230
249  TVM+F+I       16532.194    193 33450.388    33725.696    34250.215
250  TVM+F+G4      15315.436    193 31016.872    31292.181    31816.700
251  TVM+F+I+G4    15291.741    194 30971.483    31250.671    31775.455
252  TVM+F+R2      15637.246    194 31662.491    31941.680    32466.464
253  TVM+F+R3      15349.976    196 31091.953    31379.031    31904.213
254  TVM+F+R4      15300.455    198 30996.909    31292.056    31817.458
255  TVM+F+R5      15299.261    200 30998.522    31301.918    31827.359
261  SYM           17099.334    190 34578.668    34842.596    35366.064
262  SYM+I         16538.462    191 33458.924    33726.603    34250.463
263  SYM+G4        15518.645    191 31419.290    31686.969    32210.829
264  SYM+I+G4      15509.667    192 31403.333    31674.806    32199.017
265  SYM+R2        15748.795    192 31881.589    32153.062    32677.273
266  SYM+R3        15531.671    194 31451.341    31730.530    32255.313
267  SYM+R4        15507.159    196 31406.317    31693.395    32218.578
268  SYM+R5        15505.269    198 31406.537    31701.684    32227.086
274  GTR+F         17268.138    193 34922.276    35197.585    35722.104
275  GTR+F+I       16521.577    194 33431.154    33710.342    34235.126
276  GTR+F+G4      15310.187    194 31008.374    31287.562    31812.346
277  GTR+F+I+G4    15284.715    195 30959.431    31242.542    31767.547
278  GTR+F+R2      15635.148    195 31660.295    31943.406    32468.411
279  GTR+F+R3      15335.464    197 31064.929    31356.018    31881.333
280  GTR+F+R4      15292.574    199 30983.148    31282.396    31807.841
281  GTR+F+R5      15290.601    201 30983.203    31290.794    31816.184
Akaike Information Criterion:           GTR+F+I+G4
Corrected Akaike Information Criterion: GTR+F+I+G4
Bayesian Information Criterion:         GTR+F+I+G4
Best-fit model: GTR+F+I+G4 chosen according to BIC

All model information printed to Pettalidae_16S_mafft_BMGE.fasta.model.gz
CPU time for ModelFinder: 51.840 seconds (0h:0m:51s)
Wall-clock time for ModelFinder: 52.240 seconds (0h:0m:52s)
Generating 1000 samples for ultrafast bootstrap (seed: 285103)...

NOTE: 6 MB RAM (0 GB) is required!
Estimate model parameters (epsilon = 0.100)
Thoroughly optimizing +I+G parameters from 10 start values...
Init pinv, alpha: 0.000, 1.000 / Estimate: 0.000, 0.490 / LogL: -15310.209
Init pinv, alpha: 0.022, 1.000 / Estimate: 0.152, 0.682 / LogL: -15284.699
Init pinv, alpha: 0.043, 1.000 / Estimate: 0.151, 0.682 / LogL: -15284.711
Init pinv, alpha: 0.065, 1.000 / Estimate: 0.152, 0.683 / LogL: -15284.699
Init pinv, alpha: 0.087, 1.000 / Estimate: 0.153, 0.686 / LogL: -15284.695
Init pinv, alpha: 0.108, 1.000 / Estimate: 0.152, 0.686 / LogL: -15284.702
Init pinv, alpha: 0.130, 1.000 / Estimate: 0.153, 0.689 / LogL: -15284.713
Init pinv, alpha: 0.152, 1.000 / Estimate: 0.153, 0.690 / LogL: -15284.717
Init pinv, alpha: 0.174, 1.000 / Estimate: 0.154, 0.689 / LogL: -15284.707
Init pinv, alpha: 0.195, 1.000 / Estimate: 0.154, 0.691 / LogL: -15284.722
Optimal pinv,alpha: 0.153, 0.686 / LogL: -15284.695

Parameters optimization took 3.785 sec
Computing ML distances based on estimated model parameters... 0.076 sec
Computing BIONJ tree...
0.036 seconds
Log-likelihood of BIONJ tree: -15282.836
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 98 parsimony trees... 0.958 second
Computing log-likelihood of 98 initial trees ... 1.855 seconds
Current best score: -15272.692

Do NNI search on 20 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -15238.725
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 2: -15235.522
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 3: -15233.209
Iteration 10 / LogL: -15243.722 / Time: 0h:0m:10s
Iteration 20 / LogL: -15250.403 / Time: 0h:0m:14s
Finish initializing candidate tree set (18)
Current best tree score: -15233.209 / CPU time: 10.104
Number of iterations: 20
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Iteration 30 / LogL: -15233.813 / Time: 0h:0m:17s (0h:0m:45s left)
Iteration 40 / LogL: -15248.553 / Time: 0h:0m:21s (0h:0m:34s left)
Iteration 50 / LogL: -15236.456 / Time: 0h:0m:25s (0h:0m:27s left)
Log-likelihood cutoff on original alignment: -15273.691
Iteration 60 / LogL: -15233.213 / Time: 0h:0m:29s (0h:0m:21s left)
Iteration 70 / LogL: -15233.212 / Time: 0h:0m:33s (0h:0m:15s left)
Iteration 80 / LogL: -15240.582 / Time: 0h:0m:36s (0h:0m:10s left)
Iteration 90 / LogL: -15235.441 / Time: 0h:0m:40s (0h:0m:5s left)
Iteration 100 / LogL: -15240.211 / Time: 0h:0m:44s (0h:0m:1s left)
Log-likelihood cutoff on original alignment: -15273.691
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.999
TREE SEARCH COMPLETED AFTER 104 ITERATIONS / Time: 0h:0m:46s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -15233.209
Optimal log-likelihood: -15233.206
Rate parameters:  A-C: 0.94830  A-G: 4.72034  A-T: 2.48840  C-G: 0.84084  C-T: 3.41272  G-T: 1.00000
Base frequencies:  A: 0.388  C: 0.080  G: 0.145  T: 0.388
Proportion of invariable sites: 0.149
Gamma shape alpha: 0.667
Parameters optimization took 1 rounds (0.045 sec)
BEST SCORE FOUND : -15233.206

Testing tree branches by SH-like aLRT with 1000 replicates...
1.096 sec.
Creating bootstrap support values...
Split supports printed to NEXUS file Pettalidae_16S_mafft_BMGE.fasta.splits.nex
Total tree length: 18.635

Total number of iterations: 104
CPU time used for tree search: 41.728 sec (0h:0m:41s)
Wall-clock time used for tree search: 42.000 sec (0h:0m:42s)
Total CPU time used: 47.032 sec (0h:0m:47s)
Total wall-clock time used: 47.573 sec (0h:0m:47s)

Computing bootstrap consensus tree...
Reading input file Pettalidae_16S_mafft_BMGE.fasta.splits.nex...
94 taxa and 466 splits.
Consensus tree written to Pettalidae_16S_mafft_BMGE.fasta.contree
Reading input trees file Pettalidae_16S_mafft_BMGE.fasta.contree
Log-likelihood of consensus tree: -15233.209

Analysis results written to: 
  IQ-TREE report:                Pettalidae_16S_mafft_BMGE.fasta.iqtree
  Maximum-likelihood tree:       Pettalidae_16S_mafft_BMGE.fasta.treefile
  Likelihood distances:          Pettalidae_16S_mafft_BMGE.fasta.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          Pettalidae_16S_mafft_BMGE.fasta.splits.nex
  Consensus tree:                Pettalidae_16S_mafft_BMGE.fasta.contree
  Screen log file:               Pettalidae_16S_mafft_BMGE.fasta.log

Date and Time: Wed Jun 15 23:14:31 2022
